Publications de l'équipe MaBioVis pour l'année 2008

Années: 2005, 2006, 2007, 2009, 2010, 2011, 2012, 2013

  1. P. Marullo, M. Aigle, M. Bely, I. Masneuf-Pomarede, P. Durrens, D. Dubourdieu, and G. Yvert. Single qtl mapping and nucleotide-level resolution of a physiologic trait in wine saccharomyces cerevisiae strains. FEMS Yeast Research, (7):941-952, 2007.
  2. R. Bourqui. Décomposition et Visualisation de graphes : Applications aux Données Biologiques. PhD thesis, Université Sciences et Technologies - Bordeaux I, 2008.
  3. P.-Y. Koenig and G. Melançon. Dagmap : Exploration interactive de relations d'héritage. In EGC'08: Extraction et Gestion des Connaissances, volume 001, pages 001-015, 2008.
  4. Y. Chiricota, G. Melançon, T. T. Phan Quang, and P. Tissandier. Visual exploration of (french) commuter networks. In Geovisualization of Dynamics, Movement, and Change AGILE'08 Satellite Workshop, 2008.
  5. G. Melançon and A. Sallaberry. Edge metrics for visual graph analytics: A comparative study. In 12th International Conference on Information Visualisation. IEEE Computer Society, 2008.
  6. E. Bilhere, P. Lucas, E. Bon, C. Le Hénaff-Le Marrec, M. Dols-Lafargue, G. De Revel, A. De Daruvar, and A. Lonvaud-Funel. La diversité des bactéries lactiques du vin, cas particulier d'une espèce: Oenococcus oeni. In 7ème colloque national "Ressouces Génétiques" (BRG07), 2008.
  7. E. Bon, P. Lucas, A. De Daruvar, and A. Lonvaud-Funel. Oenococcus oeni (alias leuconostoc oenos) une bacterie lactique du vin. que nous apporte le sequencage de son genome? In Rencontres Annuelles de l'ISVV, 2008.
  8. T. Martin, P. Durrens, E. Beyne, M. Nikolski, F. Iragne, D. J. Sherman, and J.-L. Souciet. The génolevures website is designed around comparative genomic studies of hemiascomycetous yeasts. In First German/French/European/ Meeting Yeast and Filamentous Fungi, 2008.
  9. M. Nikolski. Mining the semantics of of genome super-blocks. In 3rd Workshop on Algorithms in bioinformatics, 2008.
  10. D. J. Sherman. Genomic exploration of the hemiascomycetous yeasts. In 3rd Workshop on Algorithms in bioinformatics, 2008.
  11. D. Dimova, E. Bon, P. Lucas, R. Beugnot, M. De Leeuw, and A. Lonvaud-Funel. The whole genome of oenococcus strain ioeb 8413. In 9th Symposium on Lactic Acid Bacteria, 2008.
  12. A. Athane, E. Bilhère, E. Bon, G. Morel, P. Lucas, A. Lonvaud-Funel, and C. Le Hénaff-Le Marrec. Characterization of an acquired dps-containing gene island in the lactic acid bacterium oenococcus oeni. In 9th Symposium on Lactic Acid Bacteria, 2008.
  13. E. Bon, C. Granvalet, F. Remize, D. Dimova, P. Lucas, D. Jacob, A. Groppi, S. Penaud, C. Aulard, A. De Daruvar, A. Lonvaud-Funel, and J. Guzzo. Insights into genome plasticity of the wine-making bacterium oenococcus oeni strain atcc baa-1163 by decryption of its whole genome. In 9th Symposium on Lactic Acid Bacteria, 2008.
  14. O. Barriere, E. Lutton, C. Baudrit, M. Sicard, and B. Pinaud. Modeling human expertise on a cheese ripening industrial process using gp. In Parallel Problem Solving from Nature - PPSN X, volume 5199 of Lecture Notes in Computer Science, pages 859-868, 2008.
  15. Y. Chiricota, G. Melançon, T. T. Phan Quang, and P. Tissandier. Visual exploration of (french) commuter networks. In Colloque GeoVis, 2008.
  16. P. Durrens. La banque de données en ligne génolevures : les levures hémiascomycètes. In 7ème colloque du BRG, 2008.
  17. M. Diouf, K. Musumbu, and S. Maabout. Methodological aspects of semantics enrichment in model driven architecture. In Abdelhamid, J. Bi, D. K. Chiu, G. Ortiz, and M. Popescu, editors, The Third International Conference on Internet and Web Applications and Services, number ISBN 978-0-7695-3163-2 in IEEE. IEEE Computer Society Conference Publishing Service (CPS), 2008.
  18. J. Allali, Y. D'Aubenton-Carafa, C. Chauve, A. Denise, C. Drevet, P. Ferraro, D. Gautheret, C. Herrbach, F. Leclerc, A. De Monte, A. Ouangraoua, M.-F. Sagot, C. Saule, M. Termier, C. Thermes, and H. Touzet. Benchmarking rna secondary structure comparison algorithms. In JOBIM'08, pages 67-68, 2008.
  19. S. Maabout, M. Diouf, and K. Musumbu. Methodological aspects of semantics enrichment in model driven architecture. In I. C. Society, editor, Third International Conference on Internet and Web Applications and Service, pages 205-210, 2008.
  20. P. Hanna, M. Robine, and P. Ferraro. Visualisation of musical structure by applying improved editing algorithms. In International Computer Music Conference (ICMC), 2008.
  21. R. Bourqui and F. Jourdan. Revealing subnetwork roles using contextual visualization: comparison of metabolic networks. In 12th International Conference on Information Visualisation, pages 638-643. IEEE Computer Society, 2008.
  22. A. Goëffon, M. Nikolski, and D. J. Sherman. An efficient probabilistic population-based descent for the median genome problem. In GECCO: Genetic And Evolutionary Computation Conference, pages 315-322. ACM, 2008.
  23. R. Bourqui, F. Zaidi, F. Gilbert, U. Sharan, and P. Simonetto. Vast 2008 challenge: Social network dynamics using cell phone call patterns. In IEEE Symposium on Visual Analytics Science and Technology, 2008.
  24. P. Simonetto and D. Auber. Visualise undrawable euler diagrams. In 12th International Conference on Information Visualisation, pages 594-599, 2008.
  25. F. Chevalier, M. Delest, and J.-P. Domenger. Recherche de motifs quasi-similaires dans des graphes. In EGC 2008, 2008.
  26. P. Hanna, M. Robine, P. Ferraro, and J. Allali. Improvements of alignment algorithms for polyphonic music retrieval. In Computer Music Modeling and Retrieval 2008, pages 244-251, 2008.
  27. B. Pinaud, C. Baudrit, M. Sicard, P.-H. Wuillemin, and N. Perrot. Validation et enrichissement interactifs d'un apprentissage automatique des paramètres d'un réseau bayésien dynamique appliqué aux procédés alimentaires. In Journées Francophone sur les Réseaux Bayésiens, 2008.
  28. D. Auber, G. Melançon, and R. Bourqui. Mining networks through visual analytics: Incremental hypothesis building and validation. In F. F. S. Clive Best, editor, Mining Massive Data Sets for Security, pages 204-211. IOS Press, 2008.
  29. D. Keim, G. Andrienko, J.-D. Fekete, C. Görg, J. Kohlhammer, and G. Melançon. Visual analytics: Definition, process, and challenges. In A. Kerren, J. T. Stasko, J.-D. Fekete, and C. North, editors, Information Visualization - Human-Centered Issues and Perspectives, pages 154-175. Springer, 2008.
  30. G. Melançon. Réseaux sociaux, espaces collaboratifs et visualisation d'information. In S. Chauvin, editor, Information & visualisation: enjeux, recherches et applications, pages 77-100. Cépaduès, 2008.
  31. P.-Y. Koenig and G. Melançon. Dagmap : exploration interactive de relations d'héritage. Revue d'Intelligence Artificielle, 22(3-4/2008):355-370, 2008.
  32. P. Durrens, M. Nikolski, and D. J. Sherman. Fusion and fission of genes define a metric between fungal genomes. PLoS Computational Biology, 4(10), 2008.
  33. A. Athane, E. Bilhere, E. Bon, P. Lucas, G. Morel, A. Lonvaud-Funel, and C. Le Hénaff-Le Marrec. Characterization of an acquired-dps-containing gene island in the lactic acid bacterium oenococcus oeni. Journal of Applied Microbiology, 105(6):1866-75, 2008.
  34. D. Archambault, T. Munzner, and D. Auber. Grouseflocks: Steerable exploration of graph hierarchy space. IEEE Transactions on Visualization and Computer Graphics, 14(4):900-913, 2008.
  35. A. Telea and D. Auber. Code flows: Visualizing structural evolution of source code. Computer Graphics Forum, pages 831-938, 2008.
  36. F. Iragne, M. Nikolski, and D. J. Sherman. Extrapolation of metabolic pathways as an aid to modelling completely sequenced nonsaccharomyces yeasts. FEMS Yeast Research, 8(1):132-9, 2008.
  37. M. Cvijovic, H. Soueidan, E. Klipp, D. J. Sherman, and M. Nikolski. Exploratory simulation of cell ageing using hierarchical models. Genome Informatics, 21:114-125, 2008.
  38. V. Lacroix, L. Cottret, P. Thebault, and M.-F. Sagot. An introduction to metabolic networks and their structural analysis. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 5(4):594-617, 2008.
  39. F. Garnier and M. Nadal. Transcriptional analysis of the two reverse gyrase encoding genes of sulfolobus solfataricus p2 in relation to the growth phases and temperature conditions. Extremophiles, 12:799-809, 2008.
  40. V. Segura, A. Ouangraoua, P. Ferraro, and E. Costes. Comparison of tree architecture using tree edit distances: Application to two-year-old apple hybrids. Euphytica, 161:155-164, 2008.
  41. I. Jauberteau, M. Nadal, and J.-L. Jauberteau. Atomic force microscopy investigations on nanoindentation impressions of some metals: effect of piling-up on hardness measurements. Journal of Materials Science, 43:5956-5961, 2008.
  42. J. Allali and M.-F. Sagot. A multiple layer model to compare rna secondary structures. Software: Practice and Experience, 38(8):775-792, 2008.

Années: 2005, 2006, 2007, 2009, 2010, 2011, 2012, 2013

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