From LaBRI - Laboratoire Bordelais de Recherche en Informatique

Publications: MaBioVis2010

Publications de l'équipe MaBioVis pour l'année 2010

Années: 2005, 2006, 2007, 2008, 2009, 2011, 2012, 2013

  1. R. Uricaru, A. Mancheron, and E. Rivals. Novel definition and algorithm for chaining fragments with proportional overlaps. In E. Tannier, editor, RECOMB'10: Comparative Genomics, volume 6398 of Lecture Notes in Computer Science, pages 161-172. Springer-Verlag, 2010.
  2. D. J. Sherman, N. Loira, and N. Golenetskaya. High-performance comparative annotation. In V. Makeev and G. Kucherov, editors, Bioinformatics after next-generation sequencing, inria, 2010.
  3. D. J. Sherman. Methods for understanding function and history in small eukaryote genomes. In M. Régnier, editor, Colloquium LIX, inria, 2010.
  4. D. J. Sherman. Two examples of evolutionary algorithms in reconstructing genome evolution. In Workshop on Evolutionary Algorithms - Challenges in Theory and Practice, inria, 2010.
  5. F. Zaidi and G. Melançon. Organization of information for the web using hierarchical fuzzy clustering algorithm based on co-occurrence networks. In WI-IAT '10, volume 1, pages 421-424, 2010.
  6. F. Zaidi and G. Melançon. Evaluating the quality of clustering algorithms using cluster path lengths. In 10th Industrial Conference, ICDM, volume 6171/2010, pages 42-56. Springer, 2010.
  7. P. Durrens. The génolevures database. In P. B. Dujon, editor, 10th anniversary of Génolevures, 2010.
  8. F. Zaidi and G. Melançon. Identifying the presence of communities in complex networks through topological decomposition and component densities. In EGC 2010, Extraction et Gestion de Connaissance, volume E-19, RNTI, pages 163-174, 2010.
  9. A. Sallaberry, F. Zaidi, C. Pich, and G. Melançon. Interactive visualization and navigation of web search results revealing community structures and bridges. In Proceedings of Graphics Interface, pages 105-112, 2010.
  10. T. Martin, D. J. Sherman, and P. Durrens. Génolevures, knowledge base and annotation of hemiascomycete yeast genomes. In Journée Ouvertes Biologie Informatique Mathématiques, JOBIM 2010, 2010.
  11. T. Martin and P. Durrens. Génolevures : Policy for automated annotation of genome sequences. In Levures, Modèles et Outils IX, 2010.
  12. D. Auber, P. Mary, M. Mathiaut, J. Dubois, A. Lambert, D. Archambault, R. Bourqui, B. Pinaud, M. Delest, and G. Melançon. Tulip: a scalable graph visualization framework. In S. B. Yahia and J.-M. Petit, editors, Extraction et Gestion des Connaissances (EGC) 2010, volume RNTI E-19, pages 623-624. RNTI, 2010.
  13. D. Archambault, H. Purchase, and B. Pinaud. The readability of path-preserving clusterings of graphs. In G. Melançon, T. Munzner, and D. Weiskopf, editors, Eurovis 2010, 12th annual Eurographics/IEEE Symposium on Visualization, volume 29(3) of Eurographics/ IEEE-VGTC Symposium on Visualization 2010, pages 1173-1182. WILEY, 2010.
  14. B. Pinaud and G. Melançon. Porgy : réécriture et visualisation de graphes dynamiques. In Extraction et Gestion des Connaissances (EGC 2010), 8e Atelier Visualisation et Extraction de Connaissances, 2010.
  15. A.-L. Gaillard, P. Ferraro, F. Boudon, and C. Godin. Lossy compression of tree architectures. In T. DeJong and D. Da Silva, editors, 6th International Workshop on Functional-Structural Plant Models, pages 12-15, 2010.
  16. N. Loira and D. J. Sherman. Genome-scale metabolic reconstruction of the eukaryote cell factory yarrowia lipolytica. In 11th International Conference on Systems Biology, 2010.
  17. A. Barré, C. Lemaitre, P. Thebault, A. De Daruvar, A. Blanchard, and P. Sirand-Pugnet. Molligen 3.0, evolution of a database dedicated to the comparative genomics of mollicutes. In Congress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010., 2010.
  18. B. Laure, C. Christine, S.-P. Pascal, D. Marie-Pierre, P. Thebault, S. Evelyne, S. Colette, B. Aurélien, C. Stéphane, A. De Daruvar, R. Joël, and B. Alain. Shaping the surface proteome of minimal bacteria. In Congress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010, 2010.
  19. A. Ghozlane, F. Bringaud, F. Jourdan, and P. Thebault. Metaboflux : a method to analyze flux distribution in metabolic networks. In Workshop Metabolomics2010, AmsterdamRAI, the Netherlands, 2010.
  20. F. El Gharniti, C. Miot-Sertier, M. Dols-Lafargue, E. Bon, A. Lonvaud-Funel, and C. Le Marrec-Le Henaff. Les is30 contribuent à la diversité génétique chez les oenococcus oeni. In 17ème Colloque International du Club des Bactéries Lactiques, 2010.
  21. I. Chahid, S. Maabout, L. Martin, and M. Mosbah. Simplification de données de vol pour un stockage optimal et une visualisation accélérée. In Conférence Internationale Francophone sur l'Extraction et la Gestion de Connaissance (EGC), RNTI (Revue des Nouvelles Technologies de l'Information), pages 393-398. Cepadeues, 2010.
  22. A. Benzakour, S. Maabout, M. Mosbah, and M. Sistiaga. Time constraints extension on frequent sequential patterns. In SciTePress, editor, International Conference on Knowledge Discovery and Information Retrieval (KDIR), pages 281-287, 2010.
  23. K. Musumbu, M. Diouf, and S. Maabout. Business rules generation methods by merging model driven architecture and web semantics. In L. Wenzheng, editor, 2010 First IEEE International Conference On Software Engineering and Service Sciences, volume IEEE of IEEE, pages 33-36. IEEE, 2010.
  24. N. Hanusse and S. Maabout. Un algorithme parallèle pour l'extraction des bordures. In BDA'10 : Actes des 26èmes Journées Bases de Données Avancées, page 11 pages, 2010.
  25. J. Allali, P. Antoniou, P. Ferraro, C. Iliopoulos, and S. Michalakopoulos. Combinatorial detection of arrhytmia. In 3rd International Conference on Bio-inspired Systems and Signal Processing, pages 180-187, 2010.
  26. F. Gilbert and D. Auber. From databases to graph visualization. In 2010 14th International Conference Information Visualisation, page 128, 2010.
  27. A. Lambert, R. Bourqui, and D. Auber. 3d edge bundling for geographical data visualization. In 14th International Conference on Information Visualization (IV'10), pages 329-335, 2010.
  28. A. Lambert, D. Auber, and G. Mélançon. Living flows: enhanced exploration of edge-bundled graphs based on gpu-intensive edge rendering. In 14th International Conference on Information Visualization (IV'10), pages 523-530, 2010.
  29. C. Preuksakarn, F. Boudon, P. Ferraro, J.-B. Durand, E. Nikinmaa, and C. Godin. Reconstructing plant architecture from 3d laser scanner data. In 6th International Workshop on Functional-Structural Plant Models, pages 12-17, 2010.
  30. A.-L. Gaillard, P. Ferraro, F. Boudon, and C. Godin. Lossy compression of plant architectures. In 6th International Workshop on Functional-Structural Plant Models, pages 10-13, 2010.
  31. J. Allali, C. Chauve, P. Ferraro, and A.-L. Gaillard. Efficient chaining of seeds in ordered trees. In 21st International Workshop on Combinatorial Algorithms, 2010.
  32. R. Bourqui, P. Simonetto, and F. Jourdan. A stable decomposition algorithm for dynamical social network analysis. In D. A. Z. Fabrice Guillet, Gilbert Ritschard and H. Briand, editors, Advances in Knowledge Discovery and Management, pages 167-178. Springer, 2010.
  33. J. Allali, P. Ferraro, P. Hanna, and M. Robine. Polyphonic alignment algorithms for symbolic music retrieval. In S. Ystad, M. Aramaki, R. Kronland-Martinet, and K. Jensen, editors, Auditory Display, pages 466-482. Springer Verlag Berlin, 2010.
  34. L. Despons, P. Baret, L. Frangeul, V. Louis, P. Durrens, and J.-L. Souciet. Genome-wide computational prediction of tandem gene arrays: application in yeasts. BMC Genomics, 11(1):56, 2010.
  35. E. Rivals, A. Mancheron, and R. Uricaru. Reliable bacterial genome comparison tools. ERCIM News, 82:017-018, 2010.
  36. A. B. Canelas, N. Harrison, A. Fazio, J. Zhang, J.-P. Pitkänen, J. Van Den Brink, B. M. Bakker, L. Bogner, J. Bouwman, J. I. Castrillo, A. Cankorur, P. Chumnanpuen, P. Daran-Lapujade, D. Dikicioglu, K. Van Eunen, J. C. Ewald, J. J. Heijnen, B. Kirdar, I. Mattila, F. I. C. Mensonides, A. Niebel, M. Penttilä, J. T. Pronk, M. Reuss, L. Salusjärvi, U. Sauer, D. J. Sherman, M. Siemann-Herzberg, H. Westerhoff, J. De Winde, D. Petranovic, S. G. Oliver, C. T. Workman, N. Zamboni, and J. Nielsen. Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains. Nature Communications, 1(9):145, 2010.
  37. D. E. Gloriam, S. Orchard, D. Bertinetti, E. Björling, E. Bongcam-Rudloff, C. A. K. Borrebaeck, J. Bourbeillon, A. R. M. Bradbury, A. De Daruvar, S. Dübel, R. Frank, T. J. Gibson, L. Gold, N. Haslam, F. W. Herberg, T. Hiltke, J. D. Hoheisel, S. Kerrien, M. Koegl, Z. Konthur, B. Korn, U. Landegren, L. Montecchi-Palazzi, S. Palcy, H. Rodriguez, S. Schweinsberg, V. Sievert, O. Stoevesandt, M. J. Taussig, M. Ueffing, M. Uhlén, S. Van Der Maarel, C. Wingren, P. Woollard, D. J. Sherman, and H. Hermjakob. A community standard format for the representation of protein affinity reagents. Mol Cell Proteomics, 9(1):1-10, 2010.
  38. J. Bourbeillon, S. Orchard, I. Benhar, C. Borrebaeck, A. De Daruvar, S. Dübel, R. Frank, F. Gibson, D. Gloriam, N. Haslam, T. Hiltker, I. Humphrey-Smith, M. Hust, D. Juncker, M. Koegl, Z. Konthur, B. Korn, S. Krobitsch, S. Muyldermans, P.-A. Nygren, S. Palcy, B. Polic, H. Rodriguez, A. Sawyer, M. Schlapshy, M. Snyder, O. Stoevesandt, M. J. Taussig, M. Templin, M. Uhlen, S. Van Der Maarel, C. Wingren, H. Hermjakob, and D. J. Sherman. Minimum information about a protein affinity reagent (miapar). Nature Biotechnology, 28(7):650-3, 2010.
  39. C. Herrbach, A. Denise, and S. Dulucq. Average complexity of the jiang-wang-zhang pairwise tree alignment algorithm and of a rna secondary structure alignment algorithm. Theoretical Computer Science, 411:2423-2432, 2010.
  40. D. Archambault, T. Munzner, and D. Auber. Tugging graphs faster: Efficiently modifying path-preserving hierarchies for browsing paths. IEEE Transactions on Visualization and Computer Graphics, 2010.
  41. J. Durand, C. Bodénès, E. Chancerel, J.-M. Frigerio, G. Vendramin, F. Sebastiani, A. Buonamici, O. Gailing, H.-P. Koelewijn, F. Villani, C. Mattioni, M. Cherubini, P. G. Goicoechea, A. Herrán, Z. Ikaran, C. Cabané, S. Ueno, F. Alberto, P.-Y. Dumoulin, E. Guichoux, A. De Daruvar, A. Kremer, and C. Plomion. A fast and cost-effective approach to develop and map est-ssr markers: oak as a case study. BMC Genomics, 11:570, 2010.
  42. S. Ueno, G. Le Provost, V. Léger, C. Klopp, C. Noirot, J.-M. Frigerio, F. Salin, J. Salse, M. Abrouk, F. Murat, O. Brendel, J. Derory, P. Abadie, P. Léger, C. Cabane, A. Barré, A. De Daruvar, A. Couloux, P. Wincker, M.-P. Reviron, A. Kremer, and C. Plomion. Bioinformatic analysis of ests collected by sanger and pyrosequencing methods for a keystone forest tree species: oak. BMC Genomics, 11:650, 2010.
  43. G. Blin, A. Denise, S. Dulucq, C. Herrbach, and H. Touzet. Alignments of rna structures. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7(2):309-322, 2010.
  44. A. Lambert, R. Bourqui, and D. Auber. Winding roads: Routing edges into bundles. Computer Graphics Forum, 29(3):853-862, 2010.
  45. C. Godin and P. Ferraro. Quantifying the degree of self-nestedness of trees. application to the structural analysis of plants. IEEE TCBB, 7(4):688-703, 2010.

Années: 2005, 2006, 2007, 2008, 2009, 2011, 2012, 2013

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