| _atomsInZone | PartitionBase< setOfAtoms > | [protected] |
| _axe1 | BoxPartition | [protected] |
| _axe2 | BoxPartition | [protected] |
| _axe3 | BoxPartition | [protected] |
| _charge | PartitionBase< setOfAtoms > | [protected] |
| _firstATofFrag | PartitionBase< setOfAtoms > | [protected] |
| _gravityCenter | BoxPartition | [protected] |
| _gridOfPartition | BoxPartition | [protected] |
| _inertialMatrix | BoxPartition | [protected] |
| _nextATofFrag | PartitionBase< setOfAtoms > | [protected] |
| _numberOfPartition | PartitionBase< setOfAtoms > | [protected] |
| _partitionType | PartitionBase< setOfAtoms > | [protected] |
| _Rbuffer1 | PartitionBase< setOfAtoms > | [protected] |
| _Rbuffer2 | PartitionBase< setOfAtoms > | [protected] |
| _setOfAtoms | PartitionBase< setOfAtoms > | [protected] |
| _setOfFragments | PartitionBase< setOfAtoms > | [protected] |
| _subDomains | PartitionBase< setOfAtoms > | [protected] |
| _useFrag | PartitionBase< setOfAtoms > | [protected] |
| attachAtoms(setOfAtoms *atoms) | PartitionBase< setOfAtoms > | |
| attachAtoms(setOfFragments *fragments) | PartitionBase< setOfAtoms > | |
| BoxPartition() | BoxPartition | |
| BoxPartition(const int size, const double &R_overlap, const double &R_cut) | BoxPartition | |
| BoxPartition(const int size1, const int size2, const int size3, const double &R_overlap, const double &R_cut) | BoxPartition | |
| BoxPartition(const int size[3], const double &R_overlap, const double &R_cut) | BoxPartition | |
| build_fragmentStructure() | PartitionBase< setOfAtoms > | |
| buildAtomsInZone() | PartitionBase< setOfAtoms > | |
| buildLocalNumerotation() | BoxPartition | [private] |
| computeBoxEquilibrateCharge(const double &R_overlap, const double &R_cut) | BoxPartition | [private] |
| fixAtomsInZone() | PartitionBase< setOfAtoms > | |
| fragmentsToAtoms() | PartitionBase< setOfAtoms > | |
| getAtomsIndexInPartition(const int &part, std::vector< int > &index) | PartitionBase< setOfAtoms > | |
| getPartitionType() | PartitionBase< setOfAtoms > | [inline] |
| innerReperOfMolecule() | BoxPartition | [private] |
| newReadFromFile(std::ifstream &data) | PartitionBase< setOfAtoms > | [protected] |
| newWriteInFile(std::ofstream &out) | PartitionBase< setOfAtoms > | |
| newWriteInFileOld(std::ofstream &out) | PartitionBase< setOfAtoms > | |
| numberOfPartition() const | PartitionBase< setOfAtoms > | [inline] |
| oldReadFromFile(std::ifstream &data) | PartitionBase< setOfAtoms > | [protected] |
| partitionate(int n, const bool use_frag) | BoxPartition | |
| PartitionBase() | PartitionBase< setOfAtoms > | |
| PartitionBase(const int size, const double R1, const double R2) | PartitionBase< setOfAtoms > | |
| projectOnInnerReper() | BoxPartition | [private] |
| readFromFile(std::ifstream &data) | PartitionBase< setOfAtoms > | |
| resetData() | PartitionBase< setOfAtoms > | |
| setAtomsInKernel() | BoxPartition | [private] |
| setAtomsInOverlapAndCut() | BoxPartition | [private] |
| setLoad() | PartitionBase< setOfAtoms > | |
| setNeigboors() | BoxPartition | [private] |
| setPartitionType(const std::string &type) | PartitionBase< setOfAtoms > | [inline] |
| setToZero() | BoxPartition | [private] |
| sortInFirstDimension(int *ordre) | BoxPartition | [private] |
| writeInFile(std::ofstream &out) | PartitionBase< setOfAtoms > | |
| writeInVTKFormat(std::ofstream &out) | PartitionBase< setOfAtoms > | |
| ~BoxPartition() | BoxPartition | |
| ~PartitionBase() | PartitionBase< setOfAtoms > | |