_atomsInZone | PartitionBase< setOfAtoms > | [protected] |
_axe1 | BoxPartition | [protected] |
_axe2 | BoxPartition | [protected] |
_axe3 | BoxPartition | [protected] |
_charge | PartitionBase< setOfAtoms > | [protected] |
_firstATofFrag | PartitionBase< setOfAtoms > | [protected] |
_gravityCenter | BoxPartition | [protected] |
_gridOfPartition | BoxPartition | [protected] |
_inertialMatrix | BoxPartition | [protected] |
_nextATofFrag | PartitionBase< setOfAtoms > | [protected] |
_numberOfPartition | PartitionBase< setOfAtoms > | [protected] |
_partitionType | PartitionBase< setOfAtoms > | [protected] |
_Rbuffer1 | PartitionBase< setOfAtoms > | [protected] |
_Rbuffer2 | PartitionBase< setOfAtoms > | [protected] |
_setOfAtoms | PartitionBase< setOfAtoms > | [protected] |
_setOfFragments | PartitionBase< setOfAtoms > | [protected] |
_subDomains | PartitionBase< setOfAtoms > | [protected] |
_useFrag | PartitionBase< setOfAtoms > | [protected] |
attachAtoms(setOfAtoms *atoms) | PartitionBase< setOfAtoms > | |
attachAtoms(setOfFragments *fragments) | PartitionBase< setOfAtoms > | |
BoxPartition() | BoxPartition | |
BoxPartition(const int size, const double &R_overlap, const double &R_cut) | BoxPartition | |
BoxPartition(const int size1, const int size2, const int size3, const double &R_overlap, const double &R_cut) | BoxPartition | |
BoxPartition(const int size[3], const double &R_overlap, const double &R_cut) | BoxPartition | |
build_fragmentStructure() | PartitionBase< setOfAtoms > | |
buildAtomsInZone() | PartitionBase< setOfAtoms > | |
buildLocalNumerotation() | BoxPartition | [private] |
computeBoxEquilibrateCharge(const double &R_overlap, const double &R_cut) | BoxPartition | [private] |
fixAtomsInZone() | PartitionBase< setOfAtoms > | |
fragmentsToAtoms() | PartitionBase< setOfAtoms > | |
getAtomsIndexInPartition(const int &part, std::vector< int > &index) | PartitionBase< setOfAtoms > | |
getPartitionType() | PartitionBase< setOfAtoms > | [inline] |
innerReperOfMolecule() | BoxPartition | [private] |
newReadFromFile(std::ifstream &data) | PartitionBase< setOfAtoms > | [protected] |
newWriteInFile(std::ofstream &out) | PartitionBase< setOfAtoms > | |
newWriteInFileOld(std::ofstream &out) | PartitionBase< setOfAtoms > | |
numberOfPartition() const | PartitionBase< setOfAtoms > | [inline] |
oldReadFromFile(std::ifstream &data) | PartitionBase< setOfAtoms > | [protected] |
partitionate(int n, const bool use_frag) | BoxPartition | |
PartitionBase() | PartitionBase< setOfAtoms > | |
PartitionBase(const int size, const double R1, const double R2) | PartitionBase< setOfAtoms > | |
projectOnInnerReper() | BoxPartition | [private] |
readFromFile(std::ifstream &data) | PartitionBase< setOfAtoms > | |
resetData() | PartitionBase< setOfAtoms > | |
setAtomsInKernel() | BoxPartition | [private] |
setAtomsInOverlapAndCut() | BoxPartition | [private] |
setLoad() | PartitionBase< setOfAtoms > | |
setNeigboors() | BoxPartition | [private] |
setPartitionType(const std::string &type) | PartitionBase< setOfAtoms > | [inline] |
setToZero() | BoxPartition | [private] |
sortInFirstDimension(int *ordre) | BoxPartition | [private] |
writeInFile(std::ofstream &out) | PartitionBase< setOfAtoms > | |
writeInVTKFormat(std::ofstream &out) | PartitionBase< setOfAtoms > | |
~BoxPartition() | BoxPartition | |
~PartitionBase() | PartitionBase< setOfAtoms > | |