_atomIsInKernel | subDomain | [protected] |
_indexInCut | subDomain | [protected] |
_indexInKernel | subDomain | [protected] |
_indexInOverlap | subDomain | [protected] |
_indexOfNeighbors | subDomain | [protected] |
_length | subDomain | [protected] |
_localNum | subDomain | [protected] |
_myNum | subDomain | [protected] |
_numberOfAtoms | subDomain | [protected] |
_numberOfAtomsCut | subDomain | [protected] |
_numberOfAtomsKernel | subDomain | [protected] |
_numberOfAtomsOverlap | subDomain | [protected] |
_weight | subDomain | [protected] |
_xmax | subDomain | [protected] |
_xmin | subDomain | [protected] |
addAtomsFromSubdomainInOverlapAndCut(const int &localOverlapSubDomain, subDomain &domain, const TYPEOFSYSTEM &atoms, const double &R_overlap, const double &R_cut, bool use_frag) | subDomain | |
addAtomsInKernel(const setOfAtoms &atoms, bool use_frag) | subDomain | |
addIndexInCut(const int &a, const int i) | subDomain | [inline] |
addIndexInKernel(const int i) | subDomain | [inline] |
addIndexInKernel(const int localNum, const int globalNum) | subDomain | [inline] |
addIndexInOverlap(const int &a, const int i) | subDomain | [inline] |
addNeigboors(const int num) | subDomain | [inline] |
buildLocalNumerotation(const TYPEOFSYSTEM &atoms, std::vector< AtomIn > *atomsInZone) | subDomain | |
computeNumberOfAtoms() | subDomain | |
getAtomsIndexInCut(const int i) | subDomain | [inline] |
getAtomsIndexInKernel() | subDomain | [inline] |
getAtomsIndexInOverlap(const int i) | subDomain | [inline] |
getAtomsIsInKernel() | subDomain | [inline] |
getCentre(double *C) const | subDomain | [inline] |
getLength(double *x) | subDomain | [inline] |
getLocalNum() | subDomain | [inline] |
getLocalNumberOfSundomain(const int num) const | subDomain | [inline] |
getNeighboorsIndex() | subDomain | [inline] |
getNumberOfAtoms() const | subDomain | [inline] |
getNumberOfAtomsInCut() const | subDomain | [inline] |
getNumberOfAtomsInCut(const int num) const | subDomain | [inline] |
getNumberOfAtomsInKernel() const | subDomain | [inline] |
getNumberOfAtomsInOverlap() const | subDomain | [inline] |
getNumberOfAtomsInOverlap(const int num) const | subDomain | [inline] |
getNumberOfNeighbor(const int i) const | subDomain | [inline] |
getNumberOfNeighbors() const | subDomain | [inline] |
getVolume() const | subDomain | [inline] |
getXLength() const | subDomain | [inline] |
getXmax(const int i) const | subDomain | [inline] |
getXmax(const int i) | subDomain | [inline] |
getXmax(double *x) | subDomain | [inline] |
getXmin(const int i) const | subDomain | [inline] |
getXmin(double *x) | subDomain | [inline] |
getYLength() const | subDomain | [inline] |
getZLength() const | subDomain | [inline] |
initNumberOfOverlapDomain() | subDomain | |
initNumberOfOverlapDomain(const int &) | subDomain | |
load() const | subDomain | [inline] |
loadInCut() const | subDomain | [inline] |
loadInCut() | subDomain | [inline] |
loadInKernel() const | subDomain | [inline] |
loadInKernel() | subDomain | [inline] |
loadInOverlap() const | subDomain | [inline] |
loadInOverlap() | subDomain | [inline] |
myNumber() const | subDomain | [inline] |
myNumber() | subDomain | [inline] |
numberOfAtomsInKernel() | subDomain | [inline] |
removeNeigboors(std::vector< int > &list) | subDomain | |
resetData() | subDomain | |
setMyNumber(int num, const int nx, const int ny, const int nz) | subDomain | [inline] |
setMyNumber(int num) | subDomain | [inline] |
setNumberOfNeighbor(const int i, const int n) | subDomain | [inline] |
setXmax(const double *x) | subDomain | [inline] |
setXmin(const double &x) | subDomain | [inline] |
setXmin(const double *x) | subDomain | [inline] |
subDomain() | subDomain | |
~subDomain() | subDomain | |